RefSeq

Refseq

Content
Description	curated non-redundant sequence database of genomes.
Contact
Research center	National Center for Biotechnology Information
Primary citation	Pruitt KD & al. (2005)
Access
Website	http://www.ncbi.nlm.nih.gov/RefSeq

The Reference Sequence (RefSeq) database is an open access, annotated and curated collection of publicly available nucleotide sequences (DNA, RNA) and their protein products. This database is built by National Center for Biotechnology Information (NCBI), and, unlike GenBank, provides only a single record for each natural biological molecule (i.e. DNA, RNA or protein) for major organisms ranging from viruses to bacteria to eukaryotes.

For each model organism, RefSeq aims to provide separate and linked records for the genomic DNA, the gene transcripts, and the proteins arising from those transcripts. RefSeq is limited to major organisms for which sufficient data are available (more than 16,000 distinct “named” organisms as of September 2011), while GenBank includes sequences for any organism submitted (approximately 250,000 different named organisms).

RefSeq categories

Category	Description
NC	Complete genomic molecules
NG	Incomplete genomic region
NM	mRNA
NR	ncRNA
NP	Protein
XM	predicted mRNA model
XR	predicted ncRNA model
XP	predicted Protein model

For more details and more categories, see Table 1 in Chapter 18 of the book The Reference Sequence (RefSeq) Database.

See also

• GenBank
• Sequence analysis
• Sequence profiling tool
• Sequence motif
• UniProt
• List of sequenced eukaryotic genomes
• List of sequenced archaeal genomes

External links

• RefSeq
• GenBank, RefSeq, TPA and UniProt: What’s in a Name?

Sources

•  This article incorporates public domain material from the National Center for Biotechnology Information document "NCBI Handbook".